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alpha diversity
The term alpha diversity (α-diversity) was introduced by R. H. Whittaker〔Whittaker, R. H. (1960) Vegetation of the Siskiyou Mountains, Oregon and California. Ecological Monographs, 30, 279–338. 〕〔Whittaker, R. H. (1972). Evolution and Measurement of Species Diversity. Taxon, 21, 213-251. 〕 together with the terms beta diversity (β-diversity) and gamma diversity (γ-diversity). Whittaker's idea was that the total species diversity in a landscape (gamma diversity) is determined by two different things, the mean species diversity in sites or habitats at a more local scale (alpha diversity) and the differentiation among those habitats (beta diversity).
==Scale considerations==
Both the area or landscape of interest and the sites or habitats within it may be of very different sizes in different situations, and no consensus has been reached on what spatial scales are appropriate to quantify alpha diversity.〔Whittaker, R. J. et al. (2001). Scale and species richness: towards a general, hierarchical theory of species diversity. Journal of Biogeography, 28, 453-470. 〕 It has therefore been proposed that the definition of alpha diversity does not need to be tied to a specific spatial scale: alpha diversity can be measured for an existing dataset that consists of subunits at any scale.〔Tuomisto, H. (2010) A diversity of beta diversities: straightening up a concept gone awry. Part 1. Defining beta diversity as a function of alpha and gamma diversity. Ecography, 33, 2-22. 〕 The subunits can be, for example, sampling units that were already used in the field when carrying out the inventory, or grid cells that are delimited just for the purpose of analysis. If results are extrapolated beyond the actual observations, it needs to be taken into account that the species diversity in the subunits generally gives an underestimation of the species diversity in larger areas.〔Colwell, R. K. and Coddington, J. A. (1994) Estimating terrestrial biodiversity through extrapolation. Philosophical Transactions: Biological Sciences, 345, 101-118.〕〔Tuomisto, H. (2010) A diversity of beta diversities: straightening up a concept gone awry. Part 2. Quantifying beta diversity and related phenomena. Ecography, 33, 23-45. 〕
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